WebJan 27, 2024 · The SNPs were located in the cytosolic class I small heat-shock protein, CTR/DRE binding transcription factor, and isocitrate dehydrogenase genes and explained 5.8–13.4% of the phenotypic variance. Web− The European Genome-phenome Archive is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from …
SCAN: SNP and copy number annotation - Oxford Academic
WebDec 14, 2024 · Genome-Wide DArTSeq Genotyping and Phenotypic Based Assessment of Within and Among Accessions Diversity and Effective Sample Size in the Diverse Sorghum, Pearl Millet, and Pigeonpea Landraces ... SNP Filtering. The SNP markers from DArTSeq were filtered with a maximum threshold of 95% reproducibility, 80% call rate for markers, … cn tower year built
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WebNormality test of phenotypic data. (a) Normal distribution of PH in the N-applied area. (b) Normal distribution of GD in the N-applied area. ... SNPs above red lines passed the Bonferroni correction test, and SC1-SC15 indicate SNPs signal clusters. Using the candidate intervals of 20 kb upstream and downstream of significant SNPs, a total of 92 ... WebAug 12, 2024 · Phenotypic and molecular marker analysis using SNP, SRAP, and ISSR markers revealed great genetic variation among S. secundatum accessions, which were consistently divided into three classes. Our findings provide a theoretical basis for the genetic diversity and classification of S. secundatum . WebMar 30, 2024 · SNPs and phenotypic data are available on the Dryad data repository (Ocampo et al., 2024). “Scorvina_SNPs_1.vcf” and “Scorvina_SNPs_2.vcf” contain the SNP data sets according to our two filtering criteria. “Scorvina_B2.txt” includes plumage brightness per patch per individual. “Scorvina_morph.txt” includes morphometric data. calculate bod from cod